PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G081900.1
Common NameB456_002G081900, LOC105780171
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 239aa    MW: 26214.7 Da    PI: 6.5534
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G081900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.2e-1179126454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++  rE+ RRdr+N++f eL ++l +    + +K +K++iL  Av+ + +L
  Gorai.002G081900.1  79 SKACREKLRRDRLNDKFMELGSILEPG---RPPKTDKSAILIDAVRMVTQL 126
                         6789**********************8...89**************99988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.71675126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-1375145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.83E-778131No hitNo description
PfamPF000105.1E-979126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1279148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-881132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVSPENSNYW SHFDYATLID DIPVPDDPYA GFAWSTQPID APSNVVSVEI DGSFGDSDGL  60
KESGSKKRVR SESCNASSSK ACREKLRRDR LNDKFMELGS ILEPGRPPKT DKSAILIDAV  120
RMVTQLRGEA QKLKDSNTSL QERIKELKSE KNELRDEKQR LKAEKERLEQ QLKAMNAQPS  180
FMPPAPPAIP AAFAAAPGQA PGNKLVPLIG YPGVAMWQFM PPAAVDTSQD HVLRPPVA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012459799.11e-176PREDICTED: transcription factor ILR3-like isoform X1
SwissprotQ9FH371e-115ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0D2NJV51e-176A0A0D2NJV5_G
STRINGVIT_19s0014g05100.t011e-125(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14372890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.11e-101bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]